MAP, the microRNAs Analysis Portal

MirCompare, select miRNAs involved in cross-kingdom interaction

Here we present MirCompare 2.0, a major upgrade of MirCompare software
MirCompare algorithm compares sets of microRNAs belonging to different kingdoms, for their capacity to bind host mRNAs. An efficient double-phase approach based on sequential comparing and filtering, let the user to select a strict number of microRNAs with a potential regolative role in cross-kingdom interaction.

What's new in MirCompare 2.0:

Improved local alignment that supports open and extended gap penalties
Prediction of experimentally validated target genes (Tarbase v8.0)
Selection of computationally predicted target genes (CoMIR)
We provide miRNomes of most used species to download in FASTA format [ H. sapiens, M. musculus, R.norvegicus ]

Plant miRNA fasta file	Mammalian miRNA fasta file
Paste a custom sequence (optional)	Paste a custom sequence (optional)
Global alignment threshold	Seed alignment threshold
Email address We'll never share your email with anyone else	Analysis name

The r-value is defined as the best comparison rate between each miRNA couple.
An higher r-value threshold correspond to a more stringent comparison. The recommended threshold value is 0.65

Important Note: The form accepts only float values in N.dd format (i.e 0.34)

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